Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 POM121L9P-203ENST00000441984 1285 ntBASIC14.47□□□□□ -0.09
SIX3O95343 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.47□□□□□ -0.09
SIX3O95343 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 AC009486.1-201ENST00000569860 813 ntBASIC14.47□□□□□ -0.09
SIX3O95343 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 AC138696.2-201ENST00000607376 223 ntBASIC14.47□□□□□ -0.09
SIX3O95343 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SIX3O95343 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
SIX3O95343 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SIX3O95343 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
SIX3O95343 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SIX3O95343 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SIX3O95343 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SIX3O95343 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 AC245100.3-201ENST00000441281 285 ntBASIC14.46□□□□□ -0.09
SIX3O95343 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.46□□□□□ -0.09
SIX3O95343 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.46□□□□□ -0.09
SIX3O95343 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.46□□□□□ -0.09
SIX3O95343 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SIX3O95343 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.46□□□□□ -0.09
SIX3O95343 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.46□□□□□ -0.09
SIX3O95343 AC089987.1-201ENST00000551654 2209 ntBASIC14.46□□□□□ -0.1
SIX3O95343 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SIX3O95343 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SIX3O95343 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.46□□□□□ -0.1
SIX3O95343 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SIX3O95343 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SIX3O95343 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SIX3O95343 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SIX3O95343 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
SIX3O95343 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 AC134312.5-201ENST00000568031 1313 ntBASIC14.45□□□□□ -0.1
SIX3O95343 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SIX3O95343 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SIX3O95343 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SIX3O95343 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.45□□□□□ -0.1
SIX3O95343 AC012441.1-201ENST00000446669 685 ntBASIC14.45□□□□□ -0.1
SIX3O95343 MESTP3-201ENST00000503460 968 ntBASIC14.45□□□□□ -0.1
SIX3O95343 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.45□□□□□ -0.1
SIX3O95343 AL391280.1-201ENST00000506969 1062 ntBASIC14.45□□□□□ -0.1
SIX3O95343 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms