Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CACNA1FO60840 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CACNA1FO60840 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 AL583805.1-201ENST00000391389 531 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 ALG1L13P-202ENST00000519320 584 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 NAA40-205ENST00000539656 577 ntTSL 4 BASIC18.15■□□□□ 0.5
CACNA1FO60840 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.15■□□□□ 0.5
CACNA1FO60840 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 AC023908.3-201ENST00000564211 3047 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC18.15■□□□□ 0.5
CACNA1FO60840 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CACNA1FO60840 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 Z97180.1-201ENST00000445173 988 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 IGLV3-15-201ENST00000518356 244 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC18.15■□□□□ 0.5
CACNA1FO60840 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CACNA1FO60840 AL133499.1-201ENST00000596207 608 ntBASIC18.15■□□□□ 0.5
CACNA1FO60840 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CACNA1FO60840 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
CACNA1FO60840 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CACNA1FO60840 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CACNA1FO60840 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.14■□□□□ 0.49
CACNA1FO60840 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
CACNA1FO60840 AL353770.1-201ENST00000614915 403 ntBASIC18.14■□□□□ 0.49
CACNA1FO60840 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC18.14■□□□□ 0.49
CACNA1FO60840 LINC00115-201ENST00000473798 1317 ntBASIC18.14■□□□□ 0.49
CACNA1FO60840 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CACNA1FO60840 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
CACNA1FO60840 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CACNA1FO60840 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC18.14■□□□□ 0.49
CACNA1FO60840 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CACNA1FO60840 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CACNA1FO60840 KRT17P5-201ENST00000332088 839 ntBASIC18.13■□□□□ 0.49
CACNA1FO60840 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.13■□□□□ 0.49
CACNA1FO60840 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.13■□□□□ 0.49
CACNA1FO60840 BX679664.3-201ENST00000414070 555 ntBASIC18.13■□□□□ 0.49
CACNA1FO60840 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.13■□□□□ 0.49
CACNA1FO60840 AC113935.1-201ENST00000471722 555 ntBASIC18.13■□□□□ 0.49
CACNA1FO60840 MRPL22P1-201ENST00000505398 616 ntBASIC18.13■□□□□ 0.49
CACNA1FO60840 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.13■□□□□ 0.49
CACNA1FO60840 RPL17P45-201ENST00000586289 509 ntBASIC18.13■□□□□ 0.49
CACNA1FO60840 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.13■□□□□ 0.49
CACNA1FO60840 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CACNA1FO60840 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.13■□□□□ 0.49
CACNA1FO60840 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CACNA1FO60840 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CACNA1FO60840 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CACNA1FO60840 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CACNA1FO60840 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CACNA1FO60840 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
CACNA1FO60840 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms