Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 NUTM2HP-201ENST00000442076 2498 ntBASIC11.95□□□□□ -0.5
HMGB3O15347 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 KLK8-202ENST00000320838 456 ntTSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 RNF146-204ENST00000476956 884 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 KRT18P35-201ENST00000510488 1269 ntBASIC11.95□□□□□ -0.5
HMGB3O15347 RNA5SP415-201ENST00000517246 115 ntBASIC11.95□□□□□ -0.5
HMGB3O15347 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC11.95□□□□□ -0.5
HMGB3O15347 SDHD-206ENST00000528182 754 ntTSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 AC099522.2-201ENST00000607001 744 ntBASIC11.95□□□□□ -0.5
HMGB3O15347 MIR7706-201ENST00000613747 67 ntBASIC11.95□□□□□ -0.5
HMGB3O15347 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 PLEC-203ENST00000354589 14736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC11.95□□□□□ -0.5
HMGB3O15347 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 TACC1-201ENST00000276520 6513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
HMGB3O15347 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC11.94□□□□□ -0.5
HMGB3O15347 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 HLA-H-201ENST00000383620 1096 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 EMBP1-201ENST00000458200 901 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.94□□□□□ -0.5
HMGB3O15347 UNC93B7-201ENST00000509439 705 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 AP002472.1-201ENST00000577490 586 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HMGB3O15347 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 AC116407.3-201ENST00000623905 1129 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 AC008267.7-201ENST00000624570 1194 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 FAM90A12P-201ENST00000519497 2375 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 FAM90A24P-201ENST00000520792 2369 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 FER1L5-204ENST00000623019 6477 ntAPPRIS ALT2 BASIC11.94□□□□□ -0.5
HMGB3O15347 CARD14-209ENST00000573882 4537 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 CICP16-201ENST00000502609 2813 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.94□□□□□ -0.5
HMGB3O15347 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HMGB3O15347 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HMGB3O15347 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms