Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AL391647.1-201ENST00000395664 511 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 KLF2P2-201ENST00000416807 1039 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC254562.1-201ENST00000417586 456 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC009477.1-201ENST00000452936 217 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 AL589987.1-201ENST00000453380 819 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 BX088702.1-201ENST00000610784 235 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 BAP1-211ENST00000615113 489 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 BEND3P3-201ENST00000611030 2440 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.65□□□□□ -0.06
SSU72Q9NP77 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SSU72Q9NP77 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 AC083964.2-201ENST00000623988 2396 ntBASIC14.65□□□□□ -0.07
SSU72Q9NP77 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.64□□□□□ -0.07
SSU72Q9NP77 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 ALG3P1-201ENST00000508806 1114 ntBASIC14.64□□□□□ -0.07
SSU72Q9NP77 AC140878.1-201ENST00000565277 250 ntBASIC14.64□□□□□ -0.07
SSU72Q9NP77 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 SPDYE22P-201ENST00000582158 798 ntBASIC14.64□□□□□ -0.07
SSU72Q9NP77 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SSU72Q9NP77 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.64□□□□□ -0.07
SSU72Q9NP77 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.63□□□□□ -0.07
SSU72Q9NP77 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SSU72Q9NP77 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SSU72Q9NP77 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms