Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 RHOC-205ENST00000369636 786 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ZNF877P-201ENST00000437614 612 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AL009176.1-201ENST00000607876 650 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 FKBP4P8-201ENST00000610931 1369 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 SHMT1P1-201ENST00000419974 1312 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 RPS18P9-201ENST00000482817 460 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 MIR4265-201ENST00000582152 99 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 AC126755.5-201ENST00000622756 267 ntBASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHANK3Q9BYB0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 GOLGA6L16P-201ENST00000441780 1299 ntBASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 AL359219.1-201ENST00000556311 934 ntBASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 AP005212.2-201ENST00000584979 510 ntBASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 GSN-209ENST00000449733 2702 ntTSL 2 BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHANK3Q9BYB0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 HNRNPA1P42-201ENST00000458678 957 ntBASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AC093300.1-201ENST00000510368 1201 ntBASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AL591424.3-201ENST00000614278 872 ntBASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AC005274.1-201ENST00000623460 802 ntBASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms