Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 RNMTL1P1-201ENST00000454103 560 ntBASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AL021578.1-201ENST00000613646 709 ntBASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AC026748.1-201ENST00000624349 3251 ntBASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRAIPQ9BWF2 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAIPQ9BWF2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAIPQ9BWF2 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
TRAIPQ9BWF2 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.21■□□□□ 0.18
TRAIPQ9BWF2 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ZBED1P1-201ENST00000502364 1930 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 MIR769-201ENST00000390225 118 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 CYP46A4P-201ENST00000414953 267 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 PUDPP3-201ENST00000445368 636 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 RNA5SP423-201ENST00000517127 109 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 CHMP4BP1-201ENST00000556017 588 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 RN7SL774P-201ENST00000577467 290 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAIPQ9BWF2 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 E2F3P2-201ENST00000447755 1422 ntBASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 AC005089.1-201ENST00000619486 2241 ntBASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 LINC00552-201ENST00000625151 2579 ntBASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAIPQ9BWF2 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms