Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AL512638.1-201ENST00000457493 794 ntBASIC16.84■□□□□ 0.29
ERCC4Q92889 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.84■□□□□ 0.29
ERCC4Q92889 AC093214.1-201ENST00000511688 1107 ntBASIC16.84■□□□□ 0.29
ERCC4Q92889 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.84■□□□□ 0.29
ERCC4Q92889 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.84■□□□□ 0.29
ERCC4Q92889 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
ERCC4Q92889 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 BX539320.1-201ENST00000623759 877 ntBASIC16.84■□□□□ 0.29
ERCC4Q92889 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 PRSS30P-206ENST00000641773 873 ntBASIC16.84■□□□□ 0.29
ERCC4Q92889 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
ERCC4Q92889 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 MAPT-IT1-201ENST00000624111 3016 ntBASIC16.84■□□□□ 0.29
ERCC4Q92889 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ERCC4Q92889 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.84■□□□□ 0.29
ERCC4Q92889 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.84■□□□□ 0.29
ERCC4Q92889 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
ERCC4Q92889 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ERCC4Q92889 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
ERCC4Q92889 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
ERCC4Q92889 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ERCC4Q92889 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
ERCC4Q92889 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
ERCC4Q92889 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
ERCC4Q92889 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.83■□□□□ 0.28
ERCC4Q92889 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.83■□□□□ 0.28
ERCC4Q92889 EIF3FP3-201ENST00000434851 1086 ntBASIC16.83■□□□□ 0.28
ERCC4Q92889 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.83■□□□□ 0.28
ERCC4Q92889 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.83■□□□□ 0.28
ERCC4Q92889 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.83■□□□□ 0.28
ERCC4Q92889 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.83■□□□□ 0.28
ERCC4Q92889 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.83■□□□□ 0.28
ERCC4Q92889 AL359711.2-201ENST00000563105 872 ntBASIC16.83■□□□□ 0.28
ERCC4Q92889 AC120045.2-201ENST00000567334 178 ntBASIC16.83■□□□□ 0.28
ERCC4Q92889 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.83■□□□□ 0.28
ERCC4Q92889 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.83■□□□□ 0.28
ERCC4Q92889 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ERCC4Q92889 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.83■□□□□ 0.28
ERCC4Q92889 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ERCC4Q92889 CICP17-201ENST00000418553 2377 ntBASIC16.82■□□□□ 0.28
ERCC4Q92889 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 MBLAC2-202ENST00000514906 1936 ntBASIC16.82■□□□□ 0.28
ERCC4Q92889 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 AC090505.1-201ENST00000430515 1834 ntBASIC16.82■□□□□ 0.28
ERCC4Q92889 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 AL645937.2-201ENST00000396808 931 ntBASIC16.82■□□□□ 0.28
ERCC4Q92889 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC4Q92889 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.82■□□□□ 0.28
ERCC4Q92889 CYMP-203ENST00000474680 1263 ntBASIC16.82■□□□□ 0.28
ERCC4Q92889 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.82■□□□□ 0.28
ERCC4Q92889 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.82■□□□□ 0.28
ERCC4Q92889 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC4Q92889 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms