Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 KLK3-211ENST00000597483 810 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC079336.7-201ENST00000623428 1078 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC097359.2-201ENST00000604992 2389 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 MIS18BP1-201ENST00000310806 4777 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 C1orf216-201ENST00000270815 3218 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 KLHDC4-205ENST00000446344 4444 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RETN-203ENST00000629642 400 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 FLII-221ENST00000578558 2377 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PAPLN-208ENST00000555445 4282 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 UPF3AP2-201ENST00000457924 1132 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RHOXF1P1-202ENST00000635473 501 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PARVA-201ENST00000334956 4458 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 KLF2P2-201ENST00000416807 1039 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC091804.1-201ENST00000486888 567 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RN7SL720P-201ENST00000488178 304 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AL022328.3-201ENST00000607943 679 ntBASIC4.62□□□□□ -1.67
SYNE1Q8NF91 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
SYNE1Q8NF91 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms