Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 AC020922.4-201ENST00000621389 339 ntBASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AL450487.2-201ENST00000615934 407 ntBASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 AC003102.2-201ENST00000589195 1469 ntBASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMC1BQ8NDV3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC008741.2-201ENST00000612792 3115 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 WASH3P-207ENST00000560956 1394 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AHCYP3-201ENST00000420053 1279 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AL512599.1-201ENST00000430724 685 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC131206.1-201ENST00000538078 1211 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 FOXN3-AS2-201ENST00000554071 1262 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms