Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.53■□□□□ 0.4
CTR9Q6PD62 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.53■□□□□ 0.4
CTR9Q6PD62 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.53■□□□□ 0.4
CTR9Q6PD62 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CTR9Q6PD62 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTR9Q6PD62 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AL133338.1-201ENST00000565695 1517 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AL008718.2-201ENST00000609206 1313 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 VDAC1P1-201ENST00000439229 848 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 AL645933.1-201ENST00000440087 609 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 AL035414.1-201ENST00000451327 857 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 AC005740.2-201ENST00000511085 419 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 SCARNA20.5-201ENST00000516991 142 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AC103988.2-201ENST00000561804 725 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 RN7SL163P-201ENST00000583100 276 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 AC020914.3-201ENST00000594712 304 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTR9Q6PD62 MBLAC2-202ENST00000514906 1936 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 AC006504.5-208ENST00000588784 2401 ntBASIC17.52■□□□□ 0.4
CTR9Q6PD62 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CTR9Q6PD62 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CTR9Q6PD62 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CTR9Q6PD62 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.52■□□□□ 0.39
CTR9Q6PD62 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTR9Q6PD62 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AL161772.1-201ENST00000610494 4412 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 MTHFR-210ENST00000641407 2387 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AC139712.1-201ENST00000378256 1875 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 CALR4P-201ENST00000431943 946 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 AC012441.2-201ENST00000444843 739 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AL160314.3-201ENST00000556041 767 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 ACTG1P17-201ENST00000558391 1119 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 AC005962.1-201ENST00000584100 773 ntBASIC17.51■□□□□ 0.39
CTR9Q6PD62 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTR9Q6PD62 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.51■□□□□ 0.39
CTR9Q6PD62 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms