Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 KRT8P29-201ENST00000420409 1371 ntBASIC12.59□□□□□ -0.39
USF1P22415 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.59□□□□□ -0.39
USF1P22415 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 CYP46A4P-201ENST00000414953 267 ntBASIC12.59□□□□□ -0.39
USF1P22415 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 AL354877.1-201ENST00000424412 413 ntBASIC12.59□□□□□ -0.39
USF1P22415 AC016700.1-201ENST00000429424 312 ntBASIC12.59□□□□□ -0.39
USF1P22415 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.59□□□□□ -0.39
USF1P22415 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12.59□□□□□ -0.39
USF1P22415 AC106794.1-201ENST00000506935 792 ntBASIC12.59□□□□□ -0.39
USF1P22415 AC245884.6-201ENST00000515672 1067 ntBASIC12.59□□□□□ -0.39
USF1P22415 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC12.59□□□□□ -0.39
USF1P22415 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.59□□□□□ -0.39
USF1P22415 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC12.59□□□□□ -0.39
USF1P22415 AC091544.8-201ENST00000619490 361 ntBASIC12.59□□□□□ -0.39
USF1P22415 AC138466.3-201ENST00000619983 221 ntBASIC12.59□□□□□ -0.39
USF1P22415 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.59□□□□□ -0.39
USF1P22415 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
USF1P22415 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.59□□□□□ -0.39
USF1P22415 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
USF1P22415 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
USF1P22415 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
USF1P22415 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.58□□□□□ -0.39
USF1P22415 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.58□□□□□ -0.39
USF1P22415 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 PTENP1-202ENST00000532280 3996 ntBASIC12.58□□□□□ -0.4
USF1P22415 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 AC011742.3-201ENST00000439053 820 ntBASIC12.58□□□□□ -0.4
USF1P22415 CHMP1AP1-201ENST00000445563 662 ntBASIC12.58□□□□□ -0.4
USF1P22415 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.58□□□□□ -0.4
USF1P22415 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.58□□□□□ -0.4
USF1P22415 AC100850.1-201ENST00000506768 649 ntBASIC12.58□□□□□ -0.4
USF1P22415 AC105129.2-201ENST00000559536 390 ntBASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms