Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.36■□□□□ 0.21
COL11A1P12107 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.36■□□□□ 0.21
COL11A1P12107 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
COL11A1P12107 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.36■□□□□ 0.21
COL11A1P12107 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL11A1P12107 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.36■□□□□ 0.21
COL11A1P12107 LINC00115-201ENST00000473798 1317 ntBASIC16.36■□□□□ 0.21
COL11A1P12107 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL11A1P12107 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
COL11A1P12107 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 AC068867.1-201ENST00000559855 150 ntBASIC16.35■□□□□ 0.21
COL11A1P12107 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.35■□□□□ 0.21
COL11A1P12107 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 AC010976.2-201ENST00000609697 852 ntBASIC16.35■□□□□ 0.21
COL11A1P12107 AC127024.7-201ENST00000625101 200 ntBASIC16.35■□□□□ 0.21
COL11A1P12107 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
COL11A1P12107 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.35■□□□□ 0.21
COL11A1P12107 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 STK24P1-201ENST00000455035 1291 ntBASIC16.35■□□□□ 0.21
COL11A1P12107 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.35■□□□□ 0.21
COL11A1P12107 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.35■□□□□ 0.21
COL11A1P12107 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL11A1P12107 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.34■□□□□ 0.21
COL11A1P12107 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.34■□□□□ 0.21
COL11A1P12107 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL11A1P12107 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL11A1P12107 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.34■□□□□ 0.21
COL11A1P12107 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.34■□□□□ 0.21
COL11A1P12107 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC16.34■□□□□ 0.21
COL11A1P12107 RN7SL788P-201ENST00000460504 316 ntBASIC16.34■□□□□ 0.21
COL11A1P12107 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.34■□□□□ 0.21
COL11A1P12107 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC16.34■□□□□ 0.21
COL11A1P12107 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL11A1P12107 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL11A1P12107 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms