Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
HMGB1P09429 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.43■□□□□ 0.38
HMGB1P09429 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 PDIA3P1-201ENST00000471856 1510 ntBASIC17.42■□□□□ 0.38
HMGB1P09429 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 AC136759.1-202ENST00000530858 2194 ntBASIC17.42■□□□□ 0.38
HMGB1P09429 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGB1P09429 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGB1P09429 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGB1P09429 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 AL358472.3-201ENST00000608147 415 ntBASIC17.42■□□□□ 0.38
HMGB1P09429 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGB1P09429 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HMGB1P09429 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGB1P09429 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB1P09429 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 KRT8P28-201ENST00000433288 1390 ntBASIC17.41■□□□□ 0.38
HMGB1P09429 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGB1P09429 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB1P09429 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB1P09429 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 AC010141.1-201ENST00000411585 623 ntBASIC17.41■□□□□ 0.38
HMGB1P09429 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB1P09429 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 CHMP1AP1-201ENST00000445563 662 ntBASIC17.41■□□□□ 0.38
HMGB1P09429 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB1P09429 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB1P09429 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGB1P09429 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.41■□□□□ 0.38
HMGB1P09429 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB1P09429 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB1P09429 AC023310.1-201ENST00000554836 735 ntBASIC17.41■□□□□ 0.38
HMGB1P09429 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
HMGB1P09429 AC027601.3-201ENST00000622907 509 ntBASIC17.41■□□□□ 0.38
HMGB1P09429 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGB1P09429 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGB1P09429 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB1P09429 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGB1P09429 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
HMGB1P09429 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGB1P09429 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms