Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC068137.2-201ENST00000605408 478 ntBASIC11.97□□□□□ -0.49
HMGB3O15347 AC026979.3-201ENST00000607315 403 ntBASIC11.97□□□□□ -0.49
HMGB3O15347 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC11.97□□□□□ -0.49
HMGB3O15347 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.97□□□□□ -0.49
HMGB3O15347 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC11.97□□□□□ -0.49
HMGB3O15347 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HMGB3O15347 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 REM2-202ENST00000536884 1331 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 AC002056.1-201ENST00000395613 760 ntBASIC11.96□□□□□ -0.49
HMGB3O15347 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.96□□□□□ -0.49
HMGB3O15347 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 TPT1P11-201ENST00000458482 498 ntBASIC11.96□□□□□ -0.49
HMGB3O15347 AC022447.6-201ENST00000515522 438 ntBASIC11.96□□□□□ -0.49
HMGB3O15347 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.96□□□□□ -0.49
HMGB3O15347 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.96□□□□□ -0.49
HMGB3O15347 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC11.96□□□□□ -0.49
HMGB3O15347 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.96□□□□□ -0.49
HMGB3O15347 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.96□□□□□ -0.49
HMGB3O15347 MAML2-201ENST00000524717 7106 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HMGB3O15347 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
HMGB3O15347 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HMGB3O15347 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC11.96□□□□□ -0.5
HMGB3O15347 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.96□□□□□ -0.5
HMGB3O15347 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC11.96□□□□□ -0.5
HMGB3O15347 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC11.96□□□□□ -0.5
HMGB3O15347 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HMGB3O15347 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 AC016397.2-201ENST00000624848 1985 ntBASIC11.96□□□□□ -0.5
HMGB3O15347 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.5
HMGB3O15347 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC11.96□□□□□ -0.5
HMGB3O15347 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
HMGB3O15347 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HMGB3O15347 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC11.95□□□□□ -0.5
HMGB3O15347 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms