Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 KLF2P1-201ENST00000447438 1042 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 GCOM2-201ENST00000509133 1104 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 FGFR3P5-201ENST00000564496 886 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 BX088702.1-201ENST00000610784 235 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 MBLAC2-202ENST00000514906 1936 ntBASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC132872.4-202ENST00000622924 2756 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 LINC00554-201ENST00000564841 3011 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 IMP3P2-201ENST00000489760 475 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 NUP210P1-202ENST00000504322 710 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC024681.1-201ENST00000521917 487 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC105129.2-201ENST00000559536 390 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 SNORD3B-2-202ENST00000571722 791 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AL132994.2-201ENST00000603120 687 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AL353726.2-201ENST00000623259 884 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC015967.2-201ENST00000624092 234 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC006435.4-201ENST00000625037 234 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AL356737.1-201ENST00000634391 234 ntBASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.07■□□□□ 0.32
CTDP1Q9Y5B0 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AC138035.3-201ENST00000622706 2791 ntBASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AL136172.1-201ENST00000598590 1394 ntBASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AC006335.1-201ENST00000445200 547 ntBASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CTDP1Q9Y5B0 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms