Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 SPTLC1P1-201ENST00000447199 261 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 TSPY16P-201ENST00000449843 468 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 TPT1P11-201ENST00000458482 498 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 BRI3BPP1-201ENST00000594224 787 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 AC015909.5-201ENST00000624336 2266 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AL360270.3-201ENST00000609118 1348 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AC015818.8-201ENST00000587907 1519 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AL645937.2-201ENST00000396808 931 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AC134915.1-201ENST00000426461 574 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 DFFBP1-201ENST00000433250 979 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AL353779.1-201ENST00000434793 351 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 SERBP1P5-201ENST00000510079 1181 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AC004233.3-201ENST00000607794 1269 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 AL391825.1-201ENST00000457671 1364 ntBASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC39Q9UFE4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 AC093525.8-201ENST00000624099 1342 ntBASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms