Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CNTN3Q9P232 AC232323.1-201ENST00000540724 2099 ntBASIC15.83■□□□□ 0.13
CNTN3Q9P232 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.83■□□□□ 0.13
CNTN3Q9P232 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.83■□□□□ 0.13
CNTN3Q9P232 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.83■□□□□ 0.13
CNTN3Q9P232 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.13
CNTN3Q9P232 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.83■□□□□ 0.13
CNTN3Q9P232 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CNTN3Q9P232 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CNTN3Q9P232 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 RCC2P8-201ENST00000502779 1035 ntBASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 RN7SL774P-201ENST00000577467 290 ntBASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CNTN3Q9P232 MTHFR-210ENST00000641407 2387 ntBASIC15.83■□□□□ 0.12
CNTN3Q9P232 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CNTN3Q9P232 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 MIR769-201ENST00000390225 118 ntBASIC15.82■□□□□ 0.12
CNTN3Q9P232 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 IGHJ2P-201ENST00000454480 60 ntBASIC15.82■□□□□ 0.12
CNTN3Q9P232 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.82■□□□□ 0.12
CNTN3Q9P232 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 MIR3619-201ENST00000579667 83 ntBASIC15.82■□□□□ 0.12
CNTN3Q9P232 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.82■□□□□ 0.12
CNTN3Q9P232 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms