Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 AL590440.2-201ENST00000641973 1595 ntBASIC18.98■□□□□ 0.63
SMC4Q9NTJ3 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 HLA-V-201ENST00000429037 534 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CHMP1AP1-201ENST00000445563 662 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 HIST2H2BB-201ENST00000449108 381 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 IGHV3-71-201ENST00000523324 359 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 AC023310.1-201ENST00000554836 735 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 MIR4259-201ENST00000584466 101 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 AC239800.4-201ENST00000603712 296 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 LINC01230-201ENST00000625222 3017 ntBASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMC4Q9NTJ3 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 AL355994.2-201ENST00000447882 704 ntBASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 HOMER2P2-201ENST00000451621 847 ntBASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC4Q9NTJ3 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 MIR658-201ENST00000385210 100 ntBASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 CSF2RBP1-201ENST00000447905 391 ntBASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 AC017083.2-201ENST00000608069 979 ntBASIC18.95■□□□□ 0.62
SMC4Q9NTJ3 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms