Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 RN7SL832P-201ENST00000607781 1756 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AC012617.1-204ENST00000586340 2305 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AL355864.2-201ENST00000447420 863 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 GAPDHP21-201ENST00000450301 1010 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 USP32P1-208ENST00000506594 1164 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AP001889.1-201ENST00000525414 633 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 SLC25A47P1-201ENST00000531577 414 ntBASIC15.31■□□□□ 0.04
PCDH9Q9HC56 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDH9Q9HC56 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 MBLAC2-202ENST00000514906 1936 ntBASIC15.3■□□□□ 0.04
PCDH9Q9HC56 AC131206.1-201ENST00000538078 1211 ntBASIC15.3■□□□□ 0.04
PCDH9Q9HC56 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 AC011840.2-201ENST00000563063 1520 ntBASIC15.3■□□□□ 0.04
PCDH9Q9HC56 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 MIR6074-201ENST00000612054 107 ntBASIC15.3■□□□□ 0.04
PCDH9Q9HC56 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PCDH9Q9HC56 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms