Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM54Q9BYV2 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AL355864.2-201ENST00000447420 863 ntBASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AC068587.3-201ENST00000526613 355 ntBASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AC010319.3-201ENST00000597028 470 ntBASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 AP001267.2-201ENST00000532619 2086 ntBASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM54Q9BYV2 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC092135.3-201ENST00000624151 1846 ntBASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC007389.4-201ENST00000454674 793 ntBASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 FO681548.1-201ENST00000455617 1132 ntBASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AC145423.3-201ENST00000615987 467 ntBASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 AL928921.2-201ENST00000641325 2442 ntBASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM54Q9BYV2 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms