Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP88Q99567 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 AC100827.2-201ENST00000563214 1194 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 BNIP3P13-201ENST00000599968 566 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 PCBP2-OT1-201ENST00000634357 590 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP88Q99567 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
NUP88Q99567 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 AC004899.1-201ENST00000424687 1714 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.32■□□□□ 0.36
NUP88Q99567 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
NUP88Q99567 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 AGAP7P-201ENST00000582299 2062 ntBASIC17.32■□□□□ 0.36
NUP88Q99567 AGAP14-201ENST00000624701 2060 ntBASIC17.32■□□□□ 0.36
NUP88Q99567 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 AC010141.1-201ENST00000411585 623 ntBASIC17.32■□□□□ 0.36
NUP88Q99567 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.32■□□□□ 0.36
NUP88Q99567 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.32■□□□□ 0.36
NUP88Q99567 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 AC005740.2-201ENST00000511085 419 ntBASIC17.32■□□□□ 0.36
NUP88Q99567 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.32■□□□□ 0.36
NUP88Q99567 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP88Q99567 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP88Q99567 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP88Q99567 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP88Q99567 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
NUP88Q99567 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP88Q99567 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP88Q99567 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 CRCP-204ENST00000398684 492 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.31■□□□□ 0.36
NUP88Q99567 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.31■□□□□ 0.36
NUP88Q99567 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 DUX4L46-201ENST00000566845 751 ntBASIC17.31■□□□□ 0.36
NUP88Q99567 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.31■□□□□ 0.36
NUP88Q99567 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP88Q99567 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP88Q99567 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP88Q99567 ACE3P-201ENST00000423435 1973 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms