Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 RN7SL684P-201ENST00000465665 294 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AL049840.2-201ENST00000602722 535 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 AC020763.4-201ENST00000623414 4170 ntBASIC23.55■■□□□ 1.36
IFT140Q96RY7 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 RHOC-205ENST00000369636 786 ntTSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 KRT18P44-201ENST00000416086 1285 ntBASIC23.55■■□□□ 1.36
IFT140Q96RY7 AL359092.2-201ENST00000423330 585 ntBASIC23.55■■□□□ 1.36
IFT140Q96RY7 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
IFT140Q96RY7 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
IFT140Q96RY7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 SALL4P6-201ENST00000429385 1691 ntBASIC23.54■■□□□ 1.36
IFT140Q96RY7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 AC064801.2-201ENST00000625052 1303 ntBASIC23.54■■□□□ 1.36
IFT140Q96RY7 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 KRT8P6-201ENST00000399259 1207 ntBASIC23.54■■□□□ 1.36
IFT140Q96RY7 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 TBC1D3P6-201ENST00000505954 962 ntBASIC23.54■■□□□ 1.36
IFT140Q96RY7 FAM187B2P-201ENST00000577135 713 ntBASIC23.54■■□□□ 1.36
IFT140Q96RY7 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
IFT140Q96RY7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
IFT140Q96RY7 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 SARS-202ENST00000369923 1882 ntTSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 RPL13AP3-202ENST00000494676 1473 ntBASIC23.53■■□□□ 1.36
IFT140Q96RY7 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 HDGF-202ENST00000368206 960 ntTSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 AP000533.1-201ENST00000456143 1177 ntBASIC23.53■■□□□ 1.36
IFT140Q96RY7 AC099328.1-201ENST00000498809 1030 ntBASIC23.53■■□□□ 1.36
IFT140Q96RY7 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 MYL6-215ENST00000549566 685 ntTSL 2 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
IFT140Q96RY7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
IFT140Q96RY7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 PHBP10-201ENST00000416467 784 ntBASIC23.52■■□□□ 1.36
IFT140Q96RY7 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 RN7SL480P-201ENST00000581481 294 ntBASIC23.52■■□□□ 1.36
IFT140Q96RY7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC23.52■■□□□ 1.36
IFT140Q96RY7 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms