Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 AC010997.4-201ENST00000609200 1890 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 WWP2-202ENST00000359154 4515 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 NCF1C-201ENST00000438382 1427 ntBASIC9.14□□□□□ -0.95
LINC00643Q86TS7 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 ITPRIP-203ENST00000358187 3981 ntAPPRIS P1 TSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 SLC16A7-203ENST00000547379 1969 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 FSCN3-201ENST00000265825 2238 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 PIGO-202ENST00000361778 2464 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ESR1-201ENST00000206249 6458 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 C1orf216-201ENST00000270815 3218 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 EPS15L1-201ENST00000248070 2924 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TXLNG-202ENST00000398155 3998 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 PLEKHM1-201ENST00000430334 5263 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 CCBE1-202ENST00000439986 6227 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC142381.2-201ENST00000566120 298 ntBASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 GRAMD4P8-201ENST00000605465 1115 ntBASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AL138831.2-201ENST00000606564 490 ntBASIC9.13□□□□□ -0.95
LINC00643Q86TS7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ZNF555-203ENST00000591539 2270 ntAPPRIS ALT2 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC106865.1-201ENST00000602666 3034 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 OTUD6B-201ENST00000285420 3298 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 VAV1-207ENST00000599806 2717 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ABL2-204ENST00000502732 12144 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 RHBDL3-201ENST00000269051 4661 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ULK4-201ENST00000301831 4613 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 CASP7-201ENST00000345633 2659 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 CAPN8-201ENST00000366872 2427 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 PLEKHA2-209ENST00000617275 5582 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 MRVI1-209ENST00000531107 2887 ntAPPRIS P3 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 NLRP2-208ENST00000448584 3573 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC092338.2-201ENST00000568827 1415 ntBASIC9.13□□□□□ -0.95
LINC00643Q86TS7 AC137834.1-201ENST00000548184 2107 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 SMAD9-201ENST00000350148 5447 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TBC1D29-202ENST00000580161 3018 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
LINC00643Q86TS7 CACNA1G-204ENST00000359106 7648 ntAPPRIS P4 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 HSPA8P5-201ENST00000456928 2069 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ESPNL-203ENST00000409506 3610 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SOCS6-201ENST00000397942 5848 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms