Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 RN7SKP230-201ENST00000365642 335 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 U91328.1-201ENST00000437528 223 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AP000812.2-201ENST00000538934 718 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC079316.1-201ENST00000548397 411 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC020910.5-201ENST00000623668 1865 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AC092135.3-201ENST00000624151 1846 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AP000593.2-201ENST00000542775 1433 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 AHCYP2-201ENST00000430630 1300 ntBASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 MIR1202-201ENST00000408529 83 ntBASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CTBP2P5-201ENST00000454986 1264 ntBASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 AL391280.1-201ENST00000506969 1062 ntBASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 AC106820.3-201ENST00000561653 397 ntBASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SYNE3Q6ZMZ3 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 MRPL37P1-201ENST00000592451 1337 ntBASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SYNE3Q6ZMZ3 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AC113367.3-201ENST00000508316 1912 ntBASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms