Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 FGD5P1-202ENST00000614866 2498 ntBASIC10.5□□□□□ -0.73
CKS1BP61024 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
CKS1BP61024 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 EXOC8-201ENST00000366645 5100 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
CKS1BP61024 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 TBL1X-206ENST00000424279 5451 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 NEK7-201ENST00000367383 586 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC10.5□□□□□ -0.73
CKS1BP61024 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC10.5□□□□□ -0.73
CKS1BP61024 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC10.5□□□□□ -0.73
CKS1BP61024 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC10.5□□□□□ -0.73
CKS1BP61024 AC073389.1-201ENST00000595595 795 ntBASIC10.5□□□□□ -0.73
CKS1BP61024 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC10.5□□□□□ -0.73
CKS1BP61024 MIR7706-201ENST00000613747 67 ntBASIC10.5□□□□□ -0.73
CKS1BP61024 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC10.5□□□□□ -0.73
CKS1BP61024 POLR1B-216ENST00000537335 4961 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
CKS1BP61024 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
CKS1BP61024 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC10.49□□□□□ -0.73
CKS1BP61024 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 STK33-217ENST00000534493 1895 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 TMPRSS13-205ENST00000526090 2592 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC10.49□□□□□ -0.73
CKS1BP61024 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 ATP13A2-201ENST00000326735 3840 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
CKS1BP61024 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 RPL5P21-201ENST00000404620 815 ntBASIC10.49□□□□□ -0.73
CKS1BP61024 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 PPIE-208ENST00000470213 927 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 AL662844.1-201ENST00000546340 181 ntBASIC10.49□□□□□ -0.73
CKS1BP61024 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC10.49□□□□□ -0.73
CKS1BP61024 AC018845.2-201ENST00000568326 409 ntBASIC10.49□□□□□ -0.73
CKS1BP61024 AL049840.3-201ENST00000602669 611 ntBASIC10.49□□□□□ -0.73
CKS1BP61024 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
CKS1BP61024 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CKS1BP61024 AKAP8P1-201ENST00000434743 1349 ntBASIC10.49□□□□□ -0.73
CKS1BP61024 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC10.49□□□□□ -0.73
CKS1BP61024 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms