Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.04■□□□□ 0.16
HTTP42858 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HTTP42858 AC026412.1-206ENST00000502273 206 ntBASIC16.04■□□□□ 0.16
HTTP42858 AC011431.1-201ENST00000512971 230 ntBASIC16.04■□□□□ 0.16
HTTP42858 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.04■□□□□ 0.16
HTTP42858 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HTTP42858 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HTTP42858 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
HTTP42858 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HTTP42858 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 OR7E115P-201ENST00000382617 1024 ntBASIC16.04■□□□□ 0.16
HTTP42858 POLR2LP1-206ENST00000444785 187 ntBASIC16.04■□□□□ 0.16
HTTP42858 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.04■□□□□ 0.16
HTTP42858 AC016582.2-202ENST00000587765 1094 ntBASIC16.04■□□□□ 0.16
HTTP42858 AL450487.2-201ENST00000615934 407 ntBASIC16.04■□□□□ 0.16
HTTP42858 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HTTP42858 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HTTP42858 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.04■□□□□ 0.16
HTTP42858 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 RN7SL788P-201ENST00000460504 316 ntBASIC16.03■□□□□ 0.16
HTTP42858 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 SRP14-208ENST00000560773 468 ntTSL 3 BASIC16.03■□□□□ 0.16
HTTP42858 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC16.03■□□□□ 0.16
HTTP42858 SNORD3B-1-201ENST00000577988 758 ntBASIC16.03■□□□□ 0.16
HTTP42858 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 U73169.1-201ENST00000395152 367 ntBASIC16.03■□□□□ 0.16
HTTP42858 NRADDP-201ENST00000437305 691 ntBASIC16.03■□□□□ 0.16
HTTP42858 AC147876.1-201ENST00000504408 322 ntBASIC16.03■□□□□ 0.16
HTTP42858 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC16.03■□□□□ 0.16
HTTP42858 NAT9-219ENST00000582524 573 ntTSL 4 BASIC16.03■□□□□ 0.16
HTTP42858 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HTTP42858 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
HTTP42858 AC103702.1-201ENST00000548801 2630 ntBASIC16.03■□□□□ 0.16
HTTP42858 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.03■□□□□ 0.16
HTTP42858 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.03■□□□□ 0.16
HTTP42858 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 AC022447.5-201ENST00000504817 392 ntBASIC16.03■□□□□ 0.16
HTTP42858 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.03■□□□□ 0.16
HTTP42858 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 RN7SL440P-201ENST00000577855 343 ntBASIC16.03■□□□□ 0.16
HTTP42858 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC16.03■□□□□ 0.16
HTTP42858 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC16.03■□□□□ 0.16
HTTP42858 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC16.03■□□□□ 0.16
HTTP42858 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC16.03■□□□□ 0.16
HTTP42858 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HTTP42858 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HTTP42858 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.02■□□□□ 0.16
HTTP42858 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HTTP42858 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.02■□□□□ 0.16
HTTP42858 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 AC133141.1-201ENST00000443015 339 ntBASIC16.02■□□□□ 0.16
HTTP42858 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HTTP42858 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 URB1-AS1-201ENST00000534991 831 ntBASIC16.02■□□□□ 0.16
HTTP42858 EMP3-204ENST00000596315 761 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC16.02■□□□□ 0.16
HTTP42858 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
HTTP42858 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms