Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.48■□□□□ 0.07
RB1P06400 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC15.48■□□□□ 0.07
RB1P06400 AL591471.1-201ENST00000621855 229 ntBASIC15.48■□□□□ 0.07
RB1P06400 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC15.48■□□□□ 0.07
RB1P06400 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
RB1P06400 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.48■□□□□ 0.07
RB1P06400 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 AL136172.1-201ENST00000598590 1394 ntBASIC15.48■□□□□ 0.07
RB1P06400 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 AC126365.1-201ENST00000578585 1514 ntBASIC15.48■□□□□ 0.07
RB1P06400 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 AC092135.3-201ENST00000624151 1846 ntBASIC15.47■□□□□ 0.07
RB1P06400 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
RB1P06400 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.47■□□□□ 0.07
RB1P06400 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 TEKT4P2-202ENST00000559466 1312 ntBASIC15.47■□□□□ 0.07
RB1P06400 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.47■□□□□ 0.07
RB1P06400 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC15.47■□□□□ 0.07
RB1P06400 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.47■□□□□ 0.07
RB1P06400 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.47■□□□□ 0.07
RB1P06400 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 RN7SL596P-201ENST00000582123 288 ntBASIC15.47■□□□□ 0.07
RB1P06400 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC15.47■□□□□ 0.07
RB1P06400 AC011247.3-201ENST00000603297 438 ntBASIC15.47■□□□□ 0.07
RB1P06400 AC007950.2-201ENST00000615045 2347 ntBASIC15.47■□□□□ 0.07
RB1P06400 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 AC244250.3-201ENST00000620749 366 ntBASIC15.47■□□□□ 0.07
RB1P06400 AC020658.6-201ENST00000623564 1870 ntBASIC15.47■□□□□ 0.07
RB1P06400 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC15.47■□□□□ 0.07
RB1P06400 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.47■□□□□ 0.07
RB1P06400 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
RB1P06400 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.46■□□□□ 0.07
RB1P06400 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.46■□□□□ 0.07
RB1P06400 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC15.46■□□□□ 0.07
RB1P06400 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC15.46■□□□□ 0.07
RB1P06400 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC15.46■□□□□ 0.07
RB1P06400 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC15.46■□□□□ 0.07
RB1P06400 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.46■□□□□ 0.07
RB1P06400 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RB1P06400 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
RB1P06400 AC008894.3-201ENST00000624324 3103 ntBASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms