Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 AC007967.2-201ENST00000432613 625 ntBASIC11.21□□□□□ -0.61
HLA-DQA1P01909 AL139010.1-201ENST00000454878 894 ntBASIC11.21□□□□□ -0.61
HLA-DQA1P01909 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 CXCL1P1-201ENST00000502804 216 ntBASIC11.21□□□□□ -0.61
HLA-DQA1P01909 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 THTPA-204ENST00000554970 569 ntTSL 4 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 THTPA-206ENST00000556015 535 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 COQ9-214ENST00000567933 882 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 AC090643.2-201ENST00000623442 2029 ntBASIC11.21□□□□□ -0.62
HLA-DQA1P01909 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 KHSRPP1-201ENST00000427983 1768 ntBASIC11.21□□□□□ -0.62
HLA-DQA1P01909 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DQA1P01909 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 DLX4-206ENST00000611342 1662 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 AC024075.2-201ENST00000598112 1473 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 ZNF259P1-201ENST00000407656 1365 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 IL9RP2-201ENST00000423948 1312 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 KLK8-202ENST00000320838 456 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 AC092474.2-201ENST00000424288 719 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 AC009947.1-201ENST00000444350 727 ntBASIC11.2□□□□□ -0.62
HLA-DQA1P01909 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DQA1P01909 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms