Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC023090.2-201ENST00000625182 2110 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 OR7E115P-201ENST00000382617 1024 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 CA5BP1-205ENST00000435806 1064 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 CICP12-201ENST00000455801 843 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 MIR4459-201ENST00000581837 66 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC090340.1-201ENST00000620778 4980 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 MIR193A-201ENST00000384882 88 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 KRT19P4-201ENST00000443208 943 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 RN7SL478P-201ENST00000584358 298 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 TYMSP2-201ENST00000589501 424 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 HDGF-202ENST00000368206 960 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 TPT1P9-201ENST00000413759 514 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AC005722.1-201ENST00000431878 964 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AC090386.2-201ENST00000623010 1039 ntBASIC11.18□□□□□ -0.62
COL6A5A8TX70 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms