Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AL355864.2-201ENST00000447420 863 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 FO681548.1-201ENST00000455617 1132 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 MIR5189-201ENST00000577370 114 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AC010319.3-201ENST00000597028 470 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AL109924.4-201ENST00000623089 670 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AC006963.1-201ENST00000624003 1052 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AL358472.5-202ENST00000641448 1267 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AL031430.1-201ENST00000642067 1039 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 AC092135.3-201ENST00000624151 1846 ntBASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
VPS9D1Q9Y2B5 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AGGF1P1-201ENST00000509500 2073 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AC007389.4-201ENST00000454674 793 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 RN7SL752P-201ENST00000463779 287 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AC015936.2-201ENST00000593177 259 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 ENPP7P14-201ENST00000621765 1040 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 AL138725.1-201ENST00000407347 1314 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 BX640514.1-201ENST00000583223 1918 ntBASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS9D1Q9Y2B5 MAPK10-379ENST00000642013 1385 ntBASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS9D1Q9Y2B5 AC082651.2-201ENST00000496833 166 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms