Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 AC011474.4-201ENST00000623523 2076 ntBASIC12.03□□□□□ -0.48
FOXA2Q9Y261 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 KRT17P7-201ENST00000451704 1104 ntBASIC12.03□□□□□ -0.48
FOXA2Q9Y261 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 KRT18P25-201ENST00000508931 1278 ntBASIC12.03□□□□□ -0.48
FOXA2Q9Y261 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.03□□□□□ -0.48
FOXA2Q9Y261 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
FOXA2Q9Y261 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 CICP4-201ENST00000447359 2812 ntBASIC12.02□□□□□ -0.48
FOXA2Q9Y261 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA2Q9Y261 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AL512384.1-201ENST00000406683 331 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 TLE1P1-201ENST00000422965 589 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC007389.4-201ENST00000454674 793 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC005225.4-201ENST00000557330 545 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC012645.4-201ENST00000610691 1061 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC005252.2-201ENST00000624630 1141 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AC138969.2-201ENST00000532739 9932 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 MST1P2-201ENST00000457982 2291 ntBASIC12.02□□□□□ -0.49
FOXA2Q9Y261 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms