Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC027307.3-201ENST00000594262 1100 ntBASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 RPSAP52-203ENST00000622976 1023 ntBASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AL928921.2-201ENST00000641325 2442 ntBASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VPS29Q9UBQ0 AC090505.1-201ENST00000430515 1834 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 FKBP4P6-201ENST00000457486 1332 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 BX088702.1-201ENST00000610784 235 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 MIR6074-201ENST00000612054 107 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 AC132938.4-201ENST00000623835 848 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 AC020910.5-201ENST00000623668 1865 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 INE2-201ENST00000630399 1874 ntBASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS29Q9UBQ0 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 TPM3P8-201ENST00000330554 643 ntBASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS29Q9UBQ0 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms