Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 ZBED1P1-201ENST00000502364 1930 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 DGCR9-201ENST00000609630 2415 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 AC092135.3-201ENST00000624151 1846 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 GK-202ENST00000378941 458 ntTSL 3 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AL645937.2-201ENST00000396808 931 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AC012441.1-201ENST00000446669 685 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AC022137.2-201ENST00000503482 481 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SAMD11P1-201ENST00000571429 661 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 AL022328.1-201ENST00000610050 478 ntBASIC14.3□□□□□ -0.12
VMP1Q96GC9 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.3□□□□□ -0.12
VMP1Q96GC9 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VMP1Q96GC9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 OR8S1-201ENST00000310194 1080 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC005229.1-201ENST00000392885 409 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms