Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PPP1R2P4-201ENST00000424051 595 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 BPIFB5P-201ENST00000457066 1099 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PTGER4P3-201ENST00000458150 252 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AC090136.2-201ENST00000517809 420 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 KRT8P2-201ENST00000556193 944 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 MIR5001-201ENST00000580185 100 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 UROS-201ENST00000368774 744 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ALG1L3P-201ENST00000503331 765 ntBASIC19.68■□□□□ 0.74
NPHP3Q7Z494 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 AC068831.5-201ENST00000557387 328 ntBASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP3Q7Z494 AL391005.1-201ENST00000623953 2435 ntBASIC19.68■□□□□ 0.74
NPHP3Q7Z494 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC126365.1-201ENST00000578585 1514 ntBASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SERBP1P2-201ENST00000436888 1164 ntBASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 FOXN3-AS2-201ENST00000554071 1262 ntBASIC19.67■□□□□ 0.74
NPHP3Q7Z494 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 AC006504.5-208ENST00000588784 2401 ntBASIC19.67■□□□□ 0.74
NPHP3Q7Z494 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP3Q7Z494 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms