Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.02■□□□□ 0.64
USP54Q70EL1 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.02■□□□□ 0.64
USP54Q70EL1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
USP54Q70EL1 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC19.02■□□□□ 0.63
USP54Q70EL1 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC19.02■□□□□ 0.63
USP54Q70EL1 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP54Q70EL1 RPL13AP3-202ENST00000494676 1473 ntBASIC19.02■□□□□ 0.63
USP54Q70EL1 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP54Q70EL1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP54Q70EL1 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.02■□□□□ 0.63
USP54Q70EL1 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 LINP1-201ENST00000417112 917 ntTSL 2 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC19.01■□□□□ 0.63
USP54Q70EL1 PPOX-204ENST00000462866 473 ntTSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC19.01■□□□□ 0.63
USP54Q70EL1 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AP005264.6-204ENST00000588436 719 ntBASIC19.01■□□□□ 0.63
USP54Q70EL1 HKR1-225ENST00000592168 566 ntTSL 4 BASIC19.01■□□□□ 0.63
USP54Q70EL1 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC19.01■□□□□ 0.63
USP54Q70EL1 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.01■□□□□ 0.63
USP54Q70EL1 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.01■□□□□ 0.63
USP54Q70EL1 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC19.01■□□□□ 0.63
USP54Q70EL1 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
USP54Q70EL1 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.01■□□□□ 0.63
USP54Q70EL1 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP54Q70EL1 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 AC004554.1-201ENST00000422830 1468 ntBASIC19■□□□□ 0.63
USP54Q70EL1 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 AL365181.1-201ENST00000564032 1828 ntBASIC19■□□□□ 0.63
USP54Q70EL1 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP54Q70EL1 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC19■□□□□ 0.63
USP54Q70EL1 GGTLC4P-201ENST00000402176 664 ntBASIC19■□□□□ 0.63
USP54Q70EL1 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC19■□□□□ 0.63
USP54Q70EL1 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 AC244197.1-201ENST00000456494 951 ntBASIC19■□□□□ 0.63
USP54Q70EL1 RN7SL494P-201ENST00000461517 304 ntBASIC19■□□□□ 0.63
USP54Q70EL1 ALG1L3P-201ENST00000503331 765 ntBASIC19■□□□□ 0.63
USP54Q70EL1 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 AL359091.4-201ENST00000610052 409 ntBASIC19■□□□□ 0.63
USP54Q70EL1 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC19■□□□□ 0.63
USP54Q70EL1 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP54Q70EL1 AC021305.1-201ENST00000520656 1514 ntBASIC19■□□□□ 0.63
USP54Q70EL1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP54Q70EL1 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP54Q70EL1 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 KRT18P62-201ENST00000446618 1287 ntBASIC18.99■□□□□ 0.63
USP54Q70EL1 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC18.99■□□□□ 0.63
USP54Q70EL1 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC18.99■□□□□ 0.63
USP54Q70EL1 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC18.99■□□□□ 0.63
USP54Q70EL1 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC18.99■□□□□ 0.63
USP54Q70EL1 RARS-210ENST00000626454 177 ntTSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms