Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AL512306.1-201ENST00000432698 848 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC084752.1-201ENST00000509766 622 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 HERC2P11-201ENST00000562845 725 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 C2orf69P1-201ENST00000563532 1093 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC100756.2-201ENST00000569537 736 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 LINC00431-202ENST00000636375 159 ntBASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD4Q5XG99 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 IL9RP3-201ENST00000442856 1674 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 LINC01101-201ENST00000622953 1884 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC073869.2-201ENST00000417338 1026 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 GUSBP10-201ENST00000417412 665 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 BCAS2P2-201ENST00000425064 674 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 DPY19L2P5-201ENST00000456300 331 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC010234.1-201ENST00000494599 870 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MIR5196-201ENST00000578146 115 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MIR4472-1-201ENST00000584349 80 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 AC112693.3-201ENST00000624819 1983 ntBASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD4Q5XG99 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LYSMD4Q5XG99 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms