Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
ABCA4P78363 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 KRT18P36-201ENST00000411618 1276 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 FOS-204ENST00000554617 796 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 AC141586.1-203ENST00000567242 366 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 PAM16-211ENST00000575848 518 ntTSL 3 BASIC12.74□□□□□ -0.37
ABCA4P78363 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 MIR4522-201ENST00000584932 87 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC12.74□□□□□ -0.37
ABCA4P78363 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 CICP23-201ENST00000605013 2741 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.74□□□□□ -0.37
ABCA4P78363 AC026320.2-201ENST00000434379 478 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
ABCA4P78363 AC130709.1-201ENST00000484779 1212 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
ABCA4P78363 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC12.74□□□□□ -0.37
ABCA4P78363 GMFG-209ENST00000600322 622 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 C18orf15-201ENST00000623680 2534 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 SSR4P1-203ENST00000599569 2260 ntBASIC12.74□□□□□ -0.37
ABCA4P78363 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA4P78363 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA4P78363 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA4P78363 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
ABCA4P78363 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 AL157407.1-201ENST00000435784 904 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 AC012441.2-201ENST00000444843 739 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms