Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 AL136172.1-201ENST00000598590 1394 ntBASIC13.3□□□□□ -0.28
CLRN1P58418 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 TPM3P8-201ENST00000330554 643 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.29□□□□□ -0.28
CLRN1P58418 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 TPT1P11-201ENST00000458482 498 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.29□□□□□ -0.28
CLRN1P58418 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.29□□□□□ -0.28
CLRN1P58418 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 AC015936.2-201ENST00000593177 259 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 AC004466.1-201ENST00000599515 1080 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
CLRN1P58418 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 BX640514.1-201ENST00000583223 1918 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLRN1P58418 AC003102.2-201ENST00000589195 1469 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 AL354702.1-201ENST00000442006 1960 ntBASIC13.29□□□□□ -0.28
CLRN1P58418 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.29□□□□□ -0.28
CLRN1P58418 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.29□□□□□ -0.28
CLRN1P58418 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CLRN1P58418 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.28□□□□□ -0.28
CLRN1P58418 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.28□□□□□ -0.28
CLRN1P58418 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.28□□□□□ -0.28
CLRN1P58418 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
CLRN1P58418 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.28□□□□□ -0.28
CLRN1P58418 AC092135.3-201ENST00000624151 1846 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CLRN1P58418 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.28□□□□□ -0.28
CLRN1P58418 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLRN1P58418 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.28□□□□□ -0.28
CLRN1P58418 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.28□□□□□ -0.28
CLRN1P58418 C2orf27AP3-201ENST00000434123 579 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 TTTY23B-201ENST00000442790 549 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 INE1-201ENST00000456273 945 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 AC106760.1-201ENST00000508690 800 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
CLRN1P58418 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CLRN1P58418 RN7SL48P-201ENST00000579283 293 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 MIR3197-201ENST00000582241 73 ntBASIC13.28□□□□□ -0.28
CLRN1P58418 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms