Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 BASP1P1-201ENST00000430708 665 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.62□□□□□ -0.07
PKNOX1P55347 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.62□□□□□ -0.07
PKNOX1P55347 AC022616.1-201ENST00000518688 554 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.62□□□□□ -0.07
PKNOX1P55347 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.62□□□□□ -0.07
PKNOX1P55347 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 AC099568.2-201ENST00000609194 695 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 AC093512.1-201ENST00000617969 520 ntBASIC14.62□□□□□ -0.07
PKNOX1P55347 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.62□□□□□ -0.07
PKNOX1P55347 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
PKNOX1P55347 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PKNOX1P55347 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 AGGF1P1-201ENST00000509500 2073 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 DGCR9-201ENST00000609630 2415 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
PKNOX1P55347 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.61□□□□□ -0.07
PKNOX1P55347 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC093004.1-201ENST00000508850 424 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 AC104596.2-201ENST00000512793 793 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC105206.1-202ENST00000314927 2368 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PKNOX1P55347 AC099521.3-201ENST00000624251 2938 ntBASIC14.61□□□□□ -0.07
PKNOX1P55347 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
PKNOX1P55347 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PKNOX1P55347 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.6□□□□□ -0.07
PKNOX1P55347 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms