Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.08■□□□□ 0.8
MSH6P52701 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
MSH6P52701 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
MSH6P52701 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH6P52701 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC20.08■□□□□ 0.8
MSH6P52701 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC20.08■□□□□ 0.8
MSH6P52701 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH6P52701 AC095040.1-201ENST00000513286 675 ntBASIC20.08■□□□□ 0.8
MSH6P52701 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH6P52701 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC20.08■□□□□ 0.8
MSH6P52701 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 MPI-203ENST00000535694 1523 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 AC132872.4-202ENST00000622924 2756 ntBASIC20.07■□□□□ 0.8
MSH6P52701 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
MSH6P52701 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH6P52701 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH6P52701 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MSH6P52701 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH6P52701 AL512599.1-201ENST00000430724 685 ntBASIC20.07■□□□□ 0.8
MSH6P52701 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
MSH6P52701 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH6P52701 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH6P52701 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH6P52701 AL591471.1-201ENST00000621855 229 ntBASIC20.07■□□□□ 0.8
MSH6P52701 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MSH6P52701 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH6P52701 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH6P52701 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH6P52701 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
MSH6P52701 AL591122.2-201ENST00000624125 1853 ntBASIC20.06■□□□□ 0.8
MSH6P52701 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH6P52701 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH6P52701 GAS5-209ENST00000430245 723 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH6P52701 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH6P52701 AC006529.1-201ENST00000459978 637 ntBASIC20.06■□□□□ 0.8
MSH6P52701 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC20.06■□□□□ 0.8
MSH6P52701 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC20.06■□□□□ 0.8
MSH6P52701 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH6P52701 AP000845.1-201ENST00000581677 2131 ntBASIC20.06■□□□□ 0.8
MSH6P52701 RN7SL121P-201ENST00000584223 273 ntBASIC20.06■□□□□ 0.8
MSH6P52701 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH6P52701 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH6P52701 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH6P52701 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
MSH6P52701 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH6P52701 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH6P52701 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH6P52701 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms