Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
NEK3P51956 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
NEK3P51956 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.34■□□□□ 0.05
NEK3P51956 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.34■□□□□ 0.05
NEK3P51956 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
NEK3P51956 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
NEK3P51956 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NEK3P51956 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
NEK3P51956 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
NEK3P51956 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.33■□□□□ 0.05
NEK3P51956 OR2I1P-209ENST00000641730 5365 ntBASIC15.33■□□□□ 0.05
NEK3P51956 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
NEK3P51956 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
NEK3P51956 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NEK3P51956 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
NEK3P51956 AC026954.1-201ENST00000429771 1293 ntBASIC15.33■□□□□ 0.04
NEK3P51956 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 RNA5SP486-201ENST00000515961 83 ntBASIC15.33■□□□□ 0.04
NEK3P51956 AC078819.1-201ENST00000547454 765 ntBASIC15.33■□□□□ 0.04
NEK3P51956 AC012085.1-201ENST00000548270 765 ntBASIC15.33■□□□□ 0.04
NEK3P51956 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 RN7SL48P-201ENST00000579283 293 ntBASIC15.33■□□□□ 0.04
NEK3P51956 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.33■□□□□ 0.04
NEK3P51956 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 OR2I1P-210ENST00000642037 4691 ntBASIC15.33■□□□□ 0.04
NEK3P51956 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
NEK3P51956 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
NEK3P51956 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NEK3P51956 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.32■□□□□ 0.04
NEK3P51956 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
NEK3P51956 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 AL365209.1-201ENST00000624418 6473 ntBASIC15.32■□□□□ 0.04
NEK3P51956 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 AC006001.1-201ENST00000325130 474 ntBASIC15.32■□□□□ 0.04
NEK3P51956 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.32■□□□□ 0.04
NEK3P51956 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
NEK3P51956 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 AC023310.1-201ENST00000554836 735 ntBASIC15.32■□□□□ 0.04
NEK3P51956 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 AC008687.7-202ENST00000637404 953 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms