Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
USP11P51784 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USP11P51784 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
USP11P51784 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
USP11P51784 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USP11P51784 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
USP11P51784 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.67■□□□□ 0.26
USP11P51784 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
USP11P51784 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
USP11P51784 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.67■□□□□ 0.26
USP11P51784 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 AL118558.3-201ENST00000607414 1079 ntBASIC16.67■□□□□ 0.26
USP11P51784 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.67■□□□□ 0.26
USP11P51784 AP000346.4-201ENST00000614827 381 ntBASIC16.67■□□□□ 0.26
USP11P51784 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP11P51784 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.67■□□□□ 0.26
USP11P51784 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.66■□□□□ 0.26
USP11P51784 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.66■□□□□ 0.26
USP11P51784 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 TMBIM7P-202ENST00000641474 1516 ntBASIC16.66■□□□□ 0.26
USP11P51784 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 AC215219.1-201ENST00000400706 1817 ntBASIC16.66■□□□□ 0.26
USP11P51784 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP11P51784 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 AC006033.1-201ENST00000440505 426 ntBASIC16.66■□□□□ 0.26
USP11P51784 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.66■□□□□ 0.26
USP11P51784 RNMTL1P1-201ENST00000454103 560 ntBASIC16.66■□□□□ 0.26
USP11P51784 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.66■□□□□ 0.26
USP11P51784 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.66■□□□□ 0.26
USP11P51784 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 AL022328.3-201ENST00000607943 679 ntBASIC16.66■□□□□ 0.26
USP11P51784 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
USP11P51784 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USP11P51784 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 LINC00552-201ENST00000625151 2579 ntBASIC16.66■□□□□ 0.26
USP11P51784 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP11P51784 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.66■□□□□ 0.26
USP11P51784 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP11P51784 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms