Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.23□□□□□ -0.45
CDX1P47902 RN7SL399P-201ENST00000471648 279 ntBASIC12.23□□□□□ -0.45
CDX1P47902 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 AC123567.1-201ENST00000548294 1261 ntBASIC12.23□□□□□ -0.45
CDX1P47902 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 AC036164.1-201ENST00000570544 333 ntBASIC12.23□□□□□ -0.45
CDX1P47902 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.23□□□□□ -0.45
CDX1P47902 AC097359.3-201ENST00000603982 1210 ntBASIC12.23□□□□□ -0.45
CDX1P47902 TMEM261P1-201ENST00000604899 340 ntBASIC12.23□□□□□ -0.45
CDX1P47902 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 AC008494.3-201ENST00000606615 944 ntBASIC12.23□□□□□ -0.45
CDX1P47902 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 AC007431.3-201ENST00000623221 587 ntBASIC12.23□□□□□ -0.45
CDX1P47902 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
CDX1P47902 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.23□□□□□ -0.45
CDX1P47902 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
CDX1P47902 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.22□□□□□ -0.45
CDX1P47902 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.22□□□□□ -0.45
CDX1P47902 COX5BP8-201ENST00000416911 349 ntBASIC12.22□□□□□ -0.45
CDX1P47902 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.22□□□□□ -0.45
CDX1P47902 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.22□□□□□ -0.45
CDX1P47902 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
CDX1P47902 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
CDX1P47902 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.22□□□□□ -0.45
CDX1P47902 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.22□□□□□ -0.45
CDX1P47902 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CDX1P47902 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CDX1P47902 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.22□□□□□ -0.45
CDX1P47902 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms