Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC9P31274 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC9P31274 AC105137.3-201ENST00000617588 984 ntBASIC19.31■□□□□ 0.68
HOXC9P31274 AC009145.4-201ENST00000625119 1294 ntBASIC19.31■□□□□ 0.68
HOXC9P31274 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC9P31274 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC9P31274 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HOXC9P31274 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 IL9RP3-201ENST00000442856 1674 ntBASIC19.3■□□□□ 0.68
HOXC9P31274 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.3■□□□□ 0.68
HOXC9P31274 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.3■□□□□ 0.68
HOXC9P31274 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 PIN4P1-201ENST00000451079 396 ntBASIC19.3■□□□□ 0.68
HOXC9P31274 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.3■□□□□ 0.68
HOXC9P31274 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.3■□□□□ 0.68
HOXC9P31274 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC9P31274 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC9P31274 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC9P31274 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC9P31274 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.29■□□□□ 0.68
HOXC9P31274 AC025271.4-201ENST00000621477 1726 ntBASIC19.29■□□□□ 0.68
HOXC9P31274 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 AL512306.1-201ENST00000432698 848 ntBASIC19.29■□□□□ 0.68
HOXC9P31274 BUD31-205ENST00000456893 512 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 RN7SL818P-201ENST00000485099 259 ntBASIC19.29■□□□□ 0.68
HOXC9P31274 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC9P31274 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC9P31274 RN7SL725P-201ENST00000606439 259 ntBASIC19.29■□□□□ 0.68
HOXC9P31274 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HOXC9P31274 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC9P31274 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC9P31274 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HOXC9P31274 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC9P31274 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms