Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC140912.1-201ENST00000577171 1054 ntBASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11.37□□□□□ -0.59
HLA-DMBP28068 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 RNU1-114P-201ENST00000365297 166 ntBASIC11.36□□□□□ -0.59
HLA-DMBP28068 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CD81-207ENST00000481687 890 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 AP001582.1-201ENST00000525856 295 ntBASIC11.36□□□□□ -0.59
HLA-DMBP28068 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 BX539320.1-201ENST00000623759 877 ntBASIC11.36□□□□□ -0.59
HLA-DMBP28068 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms