Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL9A1P20849 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 EEF1DP5-201ENST00000431410 772 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 FAM58BP-201ENST00000439056 645 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 AL451000.1-201ENST00000451300 1186 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 CLIC4P2-201ENST00000601934 717 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC15.11■□□□□ 0.01
COL9A1P20849 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 AL365203.3-201ENST00000609742 2057 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 SHC1P1-201ENST00000425230 1745 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 AL008718.2-201ENST00000609206 1313 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 AL008638.4-201ENST00000624792 1315 ntBASIC15.11■□□□□ 0.01
COL9A1P20849 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.11■□□□□ 0.01
COL9A1P20849 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.11■□□□□ 0.01
COL9A1P20849 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL9A1P20849 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 REC114-201ENST00000331090 927 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 AC027612.2-202ENST00000445955 1199 ntBASIC15.1■□□□□ 0.01
COL9A1P20849 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.1■□□□□ 0.01
COL9A1P20849 AC019227.1-201ENST00000526902 510 ntBASIC15.1■□□□□ 0.01
COL9A1P20849 MYL6-215ENST00000549566 685 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 AL096869.2-202ENST00000557007 1237 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 AC079414.2-201ENST00000567157 1104 ntBASIC15.1■□□□□ 0.01
COL9A1P20849 OR3A1-202ENST00000615105 966 ntBASIC15.1■□□□□ 0.01
COL9A1P20849 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL9A1P20849 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.1■□□□□ 0.01
COL9A1P20849 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL9A1P20849 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL9A1P20849 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.09■□□□□ 0.01
COL9A1P20849 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.09■□□□□ 0.01
COL9A1P20849 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL9A1P20849 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.09■□□□□ 0.01
COL9A1P20849 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL9A1P20849 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.09■□□□□ 0.01
COL9A1P20849 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.09■□□□□ 0.01
COL9A1P20849 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL9A1P20849 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
COL9A1P20849 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC15.09■□□□□ 0.01
COL9A1P20849 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms