Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 MTHFR-210ENST00000641407 2387 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 MYADML-201ENST00000474610 2147 ntBASIC15.19■□□□□ 0.02
HMGA1P17096 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 FGD5P1-202ENST00000614866 2498 ntBASIC15.19■□□□□ 0.02
HMGA1P17096 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGA1P17096 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGA1P17096 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGA1P17096 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 CAP2P1-201ENST00000557743 1390 ntBASIC15.19■□□□□ 0.02
HMGA1P17096 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGA1P17096 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 AP002353.1-201ENST00000528257 1599 ntBASIC15.19■□□□□ 0.02
HMGA1P17096 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGA1P17096 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGA1P17096 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.18■□□□□ 0.02
HMGA1P17096 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGA1P17096 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AL627231.1-201ENST00000394467 1125 ntBASIC15.18■□□□□ 0.02
HMGA1P17096 AC026316.1-201ENST00000398900 414 ntBASIC15.18■□□□□ 0.02
HMGA1P17096 FXNP2-201ENST00000411625 547 ntBASIC15.18■□□□□ 0.02
HMGA1P17096 BANF1P3-201ENST00000412556 261 ntBASIC15.18■□□□□ 0.02
HMGA1P17096 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HMGA1P17096 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGA1P17096 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
HMGA1P17096 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.18■□□□□ 0.02
HMGA1P17096 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGA1P17096 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 AL022334.2-201ENST00000610000 484 ntBASIC15.18■□□□□ 0.02
HMGA1P17096 AC103691.2-201ENST00000618824 433 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms