Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 AC007787.1-201ENST00000588095 1583 ntBASIC12□□□□□ -0.49
HMGB3O15347 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 SETDB2-203ENST00000354234 6139 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 SIAE-201ENST00000263593 5583 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 CCDC144A-204ENST00000360524 5830 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ASPH-208ENST00000517856 6337 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 AL049840.3-201ENST00000602669 611 ntBASIC11.99□□□□□ -0.49
HMGB3O15347 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC11.99□□□□□ -0.49
HMGB3O15347 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 COL9A1-202ENST00000357250 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
HMGB3O15347 TNRC6C-202ENST00000335749 9740 ntAPPRIS P4 TSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HMGB3O15347 NRAP-204ENST00000369360 5535 ntTSL 5 BASIC11.99□□□□□ -0.49
HMGB3O15347 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
HMGB3O15347 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HMGB3O15347 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC11.98□□□□□ -0.49
HMGB3O15347 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms