Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
SMKR1H3BMG3 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
SMKR1H3BMG3 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
SMKR1H3BMG3 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
SMKR1H3BMG3 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 TCAM1P-207ENST00000485295 1537 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AL353705.2-201ENST00000428243 662 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AC079140.1-201ENST00000508039 487 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 KRT8P48-201ENST00000515599 1220 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 FAM86C2P-203ENST00000528684 1004 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 CD63-204ENST00000546939 779 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 LINC01225-203ENST00000563550 1244 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 AC104109.2-201ENST00000602919 1418 ntBASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC10.9□□□□□ -0.66
SMKR1H3BMG3 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
SMKR1H3BMG3 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PCDHB18P-202ENST00000526308 3197 ntBASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC10.89□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms