Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AL645608.8-201ENST00000606034 2086 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC117503.4-201ENST00000623229 1418 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CDKN2A-AS1-201ENST00000441769 823 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC133141.1-201ENST00000443015 339 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 NT5C-204ENST00000578337 582 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC132812.1-201ENST00000583145 892 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 URAHP-205ENST00000610227 398 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 AC010335.3-201ENST00000623767 531 ntBASIC11.2□□□□□ -0.62
COL6A5A8TX70 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
COL6A5A8TX70 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC11.2□□□□□ -0.62
COL6A5A8TX70 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
COL6A5A8TX70 RN7SL375P-201ENST00000492442 298 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 EEF1GP8-201ENST00000506566 1154 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AL132994.1-201ENST00000554098 400 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 RN7SL605P-201ENST00000577229 281 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 PPY-202ENST00000587006 431 ntTSL 3 BASIC11.19□□□□□ -0.62
COL6A5A8TX70 AC005777.1-201ENST00000588332 187 ntBASIC11.19□□□□□ -0.62
COL6A5A8TX70 AL591424.3-201ENST00000614278 872 ntBASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms